skip to main content
10.1145/2908961.2909021acmconferencesArticle/Chapter ViewAbstractPublication PagesgeccoConference Proceedingsconference-collections
poster

Finding Nonlinear Relationships in fMRI Time Series with Symbolic Regression

Published:20 July 2016Publication History

ABSTRACT

The brain is an intrinsically nonlinear system, yet the dominant methods used to generate network models of functional connectivity from fMRI data use linear methods. Although these approaches have been used successfully, they are limited in that they can find only linear relations within a system we know to be nonlinear.

This study employs a highly specialized genetic programming system which incorporates multiple enhancements to perform symbolic regression, a type of regression analysis that searches for declarative mathematical expressions to describe relationships in observed data.

Publicly available fMRI data from the Human Connectome Project were segmented into meaningful regions of interest and highly nonlinear mathematical expressions describing functional connectivity were generated. These nonlinear expressions exceed the explanatory power of traditional linear models and allow for more accurate investigation of the underlying physiological connectivities.

References

  1. R. Buckner and T. Braver. Event-related functional mri. In P. Bandettini and C. Moonen, editors, Functional MRI, chapter 36, pages 441--452. Springer-Verlag.Google ScholarGoogle Scholar
  2. M. Daley. An invitation to the study of brain networks, with some statistical analysis of thresholding techniques. In Discrete and Topological Models in Molecular Biology, pages 85--107. Springer, 2014.Google ScholarGoogle ScholarCross RefCross Ref
  3. N. K. Logothetis. What we can do and what we cannot do with fmri. Nature, 453(7197):869--878, 2008.Google ScholarGoogle ScholarCross RefCross Ref
  4. M. Schmidt and H. Lipson. Comparison of tree and graph encodings as function of problem complexity. In Proceedings of the 9th annual conference on Genetic and evolutionary computation, pages 1674--1679. ACM, 2007. Google ScholarGoogle ScholarDigital LibraryDigital Library
  5. M. D. Schmidt and H. Lipson. Coevolution of fitness predictors. Evolutionary Computation, IEEE Transactions on, 12(6):736--749, 2008. Google ScholarGoogle ScholarDigital LibraryDigital Library
  6. M. D. Schmidt, R. R. Vallabhajosyula, J. W. Jenkins, J. E. Hood, A. S. Soni, J. P. Wikswo, and H. Lipson. Automated refinement and inference of analytical models for metabolic networks. Physical biology, 8(5):055011, 2011.Google ScholarGoogle ScholarCross RefCross Ref

Index Terms

  1. Finding Nonlinear Relationships in fMRI Time Series with Symbolic Regression

        Recommendations

        Comments

        Login options

        Check if you have access through your login credentials or your institution to get full access on this article.

        Sign in
        • Published in

          cover image ACM Conferences
          GECCO '16 Companion: Proceedings of the 2016 on Genetic and Evolutionary Computation Conference Companion
          July 2016
          1510 pages
          ISBN:9781450343237
          DOI:10.1145/2908961

          Copyright © 2016 Owner/Author

          Permission to make digital or hard copies of part or all of this work for personal or classroom use is granted without fee provided that copies are not made or distributed for profit or commercial advantage and that copies bear this notice and the full citation on the first page. Copyrights for third-party components of this work must be honored. For all other uses, contact the Owner/Author.

          Publisher

          Association for Computing Machinery

          New York, NY, United States

          Publication History

          • Published: 20 July 2016

          Check for updates

          Qualifiers

          • poster

          Acceptance Rates

          GECCO '16 Companion Paper Acceptance Rate137of381submissions,36%Overall Acceptance Rate1,669of4,410submissions,38%

          Upcoming Conference

          GECCO '24
          Genetic and Evolutionary Computation Conference
          July 14 - 18, 2024
          Melbourne , VIC , Australia

        PDF Format

        View or Download as a PDF file.

        PDF

        eReader

        View online with eReader.

        eReader