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Geometric Crossover for Biological Sequences

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Book cover Genetic Programming (EuroGP 2006)

Part of the book series: Lecture Notes in Computer Science ((LNTCS,volume 3905))

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Abstract

This paper extends a geometric framework for interpreting crossover and mutation [4] to the case of sequences. This representation is important because it is the link between artificial evolution and biological evolution. We define and theoretically study geometric crossover for sequences under edit distance and show its intimate connection with the biological notion of sequence homology.

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References

  1. Gusfield, D.: Algorithms on Strings, Trees and Sequences. Cambridge University Press, Cambridge (1997)

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© 2006 Springer-Verlag Berlin Heidelberg

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Moraglio, A., Poli, R., Seehuus, R. (2006). Geometric Crossover for Biological Sequences. In: Collet, P., Tomassini, M., Ebner, M., Gustafson, S., Ekárt, A. (eds) Genetic Programming. EuroGP 2006. Lecture Notes in Computer Science, vol 3905. Springer, Berlin, Heidelberg. https://doi.org/10.1007/11729976_11

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  • DOI: https://doi.org/10.1007/11729976_11

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-33143-8

  • Online ISBN: 978-3-540-33144-5

  • eBook Packages: Computer ScienceComputer Science (R0)

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