- author = "Davide Ferrari and Pietro Arina and Jonathan Edgeworth and Vasa Curcin and Veronica Guidetti and Federica Mandreoli and Yanzhong Wang",
- title = "Using interpretable machine learning to predict bloodstream infection and antimicrobial resistance in patients admitted to {ICU}: Early alert predictors based on {EHR} data to guide antimicrobial stewardship",
- journal = "PLOS Digital Health",
- year = "2024",
- volume = "3",
- number = "10",
- pages = "e0000641",
- month = oct # " 16",
- keywords = "genetic algorithms, genetic programming, medicine, MOGP, Symbolic Regression, NSGA-II, NHS",
- ISSN = "2767-3170",
-
URL = "
https://pmc.ncbi.nlm.nih.gov/articles/PMC11482717/",
-
URL = "https://journals.plos.org/digitalhealth/article/file?id=10.1371/journal.pdig.0000641",
-
DOI = "
10.1371/journal.pdig.0000641",
-
code_url = "https://github.com/davideferrari92/multiobjective_symbolic_regression",
- size = "13 pages",
- abstract = "Nosocomial infections and Antimicrobial Resistance (AMR) stand as formidable healthcare challenges on a global scale. To address these issues, various infection control protocols and personalized treatment strategies, guided by laboratory tests, aim to detect bloodstream infections (BSI) and assess the potential for AMR. we introduce a machine learning (ML) approach based on Multi-Objective Symbolic Regression (MOSR), an evolutionary approach to create ML models in the form of readable mathematical equations in a multi-objective way to overcome the limitation of standard single-objective approaches. This method leverages readily available clinical data collected upon admission to intensive care units, with the goal of predicting the presence of BSI and AMR. We further assess its performance by comparing it to established ML algorithms using both naturally imbalanced real-world data and data that has been balanced through oversampling techniques. Our findings reveal that traditional ML models exhibit subpar performance across all training scenarios. In contrast, MOSR, specifically configured to minimize false negatives by optimizing also for the F1-Score, outperforms other ML algorithms and consistently delivers reliable results, irrespective of the training set balance with F1-Score.22 and.28 higher than any other alternative. This research signifies a promising path forward in enhancing Antimicrobial Stewardship (AMS) strategies. Notably, the MOSR approach can be readily implemented on a large scale, offering a new ML tool to find solutions to these critical healthcare issues affected by limited data availability.",
-
notes = "PMID: 39413052
PMCID: PMC11482717
School of Life Course and Population Sciences, King's College London, London, United Kingdom",
