Phylogenetic trees using evolutionary search: Initial progress in extending gaphyl to work with genetic data

Created by W.Langdon from gp-bibliography.bib Revision:1.7630

@InProceedings{congdon:2003:ptuesipiegtwwgd,

• author = "Clare Bates Congdon and Kevin J. Septor",
• title = "Phylogenetic trees using evolutionary search: Initial progress in extending gaphyl to work with genetic data",
• booktitle = "Proceedings of the 2003 Congress on Evolutionary Computation CEC2003",
• editor = "Ruhul Sarker and Robert Reynolds and Hussein Abbass and Kay Chen Tan and Bob McKay and Daryl Essam and Tom Gedeon",
• pages = "320--326",
• year = "2003",
• publisher = "IEEE Press",
• address = "Canberra",
• publisher_address = "445 Hoes Lane, P.O. Box 1331, Piscataway, NJ 08855-1331, USA",
• month = "8-12 " # dec,
• organisation = "IEEE Neural Network Council (NNC), Engineers Australia (IEAust), Evolutionary Programming Society (EPS), Institution of Electrical Engineers (IEE)",
• keywords = "genetic algorithms, genetic programming, Application software, Computer science, DNA, Drives, Educational institutions, Evolutionary computation, Genetics, Organisms, Phylogeny, Sequences, biology computing, evolutionary computation, genetics, tree searching, trees (mathematics), Gaphyl, Wagner parsimony, binary attributes, datasets, evolutionary algorithm application, evolutionary relationships, evolutionary search, exhaustive search, genetic data, heuristic search method, phylogenetic software package, phylogenetic trees, phylogenetic work, tree evaluation",
• ISBN = "0-7803-7804-0",
• DOI = "doi:10.1109/CEC.2003.1299592",
• abstract = "Gaphyl is an application of evolutionary algorithms to phylogenetics, an approach used by biologists to investigate evolutionary relationships among organisms. For datasets larger than 20-30 species, exhaustive search is not practical in this domain. Gaphyl uses an evolutionary search mechanism to search the space of possible phylogenetic trees, in an attempt to find the most plausible evolutionary hypotheses, while typical phylogenetic software packages use heuristic search methods. In previous work, Gaphyl has been shown to be a promising approach for searching for phylogentic trees using data with binary attributes and Wagner parsimony to evaluate the trees. In the work reported here, Gaphyl is extended to work with genetic data. Initial results with this extension further suggest that evolutionary search is a promising approach for phylogenetic work.",
• notes = "CEC 2003 - A joint meeting of the IEEE, the IEAust, the EPS, and the IEE.",

}

Genetic Programming entries for Clare Bates Congdon Kevin J Septor

Citations