Evolving better RNAfold structure prediction
Created by W.Langdon from
gp-bibliography.bib Revision:1.4951
- @InProceedings{langdon:2018:EuroGP,
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author = "William B. Langdon and Justyna Petke and
Ronny Lorenz",
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title = "Evolving better {RNAfold} structure prediction",
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booktitle = "EuroGP 2018: Proceedings of the 21st European
Conference on Genetic Programming",
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year = "2018",
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month = "4-6 " # apr,
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editor = "Mauro Castelli and Lukas Sekanina and Mengjie Zhang",
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series = "LNCS",
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volume = "10781",
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publisher = "Springer Verlag",
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address = "Parma, Italy",
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pages = "220--236",
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organisation = "EvoStar, Species",
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keywords = "genetic algorithms, genetic programming, genetic
improvement, GGGP, software~engineering, SBSE,
Bioinformatics, local search, genomic and phenotypic
Tabu restrictions, genetic repair: Poster",
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isbn13 = "978-3-319-77552-4",
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URL = "
http://www.cs.ucl.ac.uk/staff/W.Langdon/ftp/papers/langdon_2018_EuroGP.pdf",
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DOI = "
doi:10.1007/978-3-319-77553-1_14",
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size = "16 pages",
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abstract = "Grow and graft genetic programming (GGGP) evolves more
than 50000 parameters in a state-of-the-art C program
to make functional source code changes which give more
accurate predictions of how RNA molecules fold up.
Genetic improvement updates 29percent of the dynamic
programming free energy model parameters. In most cases
(50.3percent) GI gives better predictions on 4655 known
secondary structures from RNA_STRAND (29.0percent are
worse and 20.7percent are unchanged, Indeed it also
does better than parameters recommended by Andronescu,
M., et al.: Bioinformatics 23(13) (2007) i19--i28",
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notes = "New RNAfold parameters:
https://github.com/ViennaRNA/ViennaRNA/blob/34d23a07f633e8fe2366877e1e7e1d9a232dcd96/misc/rna_langdon2018.par
http://www.cs.ucl.ac.uk/staff/W.Langdon/gggp/rna_langdon2018.par
Poster:
http://www.cs.ucl.ac.uk/staff/W.Langdon/egp2018/langdon_2018_poster.pdf
Part of \cite{Castelli:2018:GP} EuroGP'2018 held in
conjunction with EvoCOP2018, EvoMusArt2018 and
EvoApplications2018",
- }
Genetic Programming entries for
William B Langdon
Justyna Petke
Ronny Lorenz
Citations