A Genetic Programming Method for the Identification of Signal Peptides and Prediction of Their Cleavage Sites
Created by W.Langdon from
gp-bibliography.bib Revision:1.8110
- @Article{Lennartsson:2004:EURASIP,
-
author = "David Lennartsson and Peter Nordin",
-
title = "A Genetic Programming Method for the Identification of
Signal Peptides and Prediction of Their Cleavage
Sites",
-
journal = "EURASIP Journal on Advances in Signal Processing",
-
year = "2004",
-
volume = "2004",
-
number = "1",
-
pages = "138--145",
-
month = jan,
-
keywords = "genetic algorithms, genetic programming, linear
genetic programming, demes, parallel sub-populations,
signal peptides, bioinformatics, programmatic motif,
artificial neural networks, cleavage site",
-
ISSN = "1687-6180",
-
publisher = "Hindawi Publishing Corporation",
-
annote = "The Pennsylvania State University CiteSeerX Archives",
-
bibsource = "OAI-PMH server at citeseerx.ist.psu.edu",
-
language = "en",
-
oai = "oai:CiteSeerX.psu:10.1.1.398.1015",
-
URL = "http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.398.1015",
-
URL = "http://asp.eurasipjournals.com/content/pdf/1687-6180-2004-153697.pdf",
-
DOI = "doi:10.1155/S1110865704309108",
-
size = "8 pages",
-
abstract = "A novel approach to signal peptide identification is
presented. We use an evolutionary algorithm for
automatic evolution of classification programs,
so-called programmatic motifs. The variant of
evolutionary algorithm used is called genetic
programming where a population of solution candidates
in the form of full computer programs is evolved, based
on training examples consisting of signal peptide
sequences. The method is compared with a previous work
using artificial neural network (ANN) approaches. Some
advantages compared to ANNs are noted. The programmatic
motif can perform computational tasks beyond that of
feed-forward neural networks and has also other
advantages such as readability. The best motif evolved
was analysed and shown to detect the h-region of the
signal peptide. A powerful parallel computer cluster
was used for the experiment.",
-
notes = "Saida Medical AB, Stena Center 1A, Goteborg SE-412 92,
Sweden",
- }
Genetic Programming entries for
David Lennartsson
Peter Nordin
Citations