- author = "Xiaorui Su and Ni Chen and Huaiqiang Sun and Yanhui Liu and Xibiao Yang and Weina Wang and Simin Zhang and Qiaoyue Tan and Jingkai Su and Qiyong Gong and Qiang Yue",
- title = "Automated machine learning based on radiomics features predicts {H3 K27M} mutation in midline gliomas of the brain",
- journal = "Neuro-Oncology",
- year = "2020",
- volume = "22",
- number = "3",
- pages = "393--401",
- month = mar,
- keywords = "genetic algorithms, genetic programming, TPOT, Cancer, H3 K27M mutation automated machine learning, autoML, midline glioma, Tree-based Pipeline Optimization Tool, magnetic resonance imaging, MRI, mutation, glioma, brain, machine learning radiomics, Pediatric Neuro-Oncology",
- ISSN = "1522-8517",
-
URL = "
https://doi.org/10.1093/neuonc/noz184",
-
URL = "
https://academic.oup.com/neuro-oncology/article-pdf/22/3/393/32794818/noz184.pdf",
-
DOI = "
doi:10.1093/neuonc/noz184",
- size = "9 pages",
-
abstract = "Conventional MRI cannot be used to identify H3 K27M
mutation status. This study aimed to investigate the
feasibility of predicting H3 K27M mutation status by
applying an automated machine learning (autoML)
approach to the MR radiomics features of patients with
midline gliomas.
This single-institution retrospective study included 100 patients with midline gliomas, including 40 patients with H3 K27M mutations and 60 wild-type patients. Radiomics features were extracted from fluid-attenuated inversion recovery images. Prior to autoML analysis, the dataset was randomly stratified into separate 75percent training and 25percent testing cohorts. The Tree-based Pipeline Optimization Tool (TPOT) was applied to optimize the machine learning pipeline and select important radiomics features. We compared the performance of 10 independent TPOT-generated models based on training and testing cohorts using the area under the curve (AUC) and average precision to obtain the final model. An independent cohort of 22 patients was used to validate the best model.
Ten prediction models were generated by TPOT, and the accuracy obtained with the best pipeline ranged from 0.788 to 0.867 for the training cohort and from 0.60 to 0.84 for the testing cohort. After comparison, the AUC value and average precision of the final model were 0.903 and 0.911 in the testing cohort, respectively. In the validation set, the AUC was 0.85, and the average precision was 0.855 for the best model.
The autoML classifier using radiomics features of conventional MR images provides high discriminatory accuracy in predicting the H3 K27M mutation status of midline glioma.",
-
notes = "Department of Radiology, West China Hospital of
Sichuan University.
Published 29 September 2019
PMID: 31563963 PMCID: PMC7442326",
