Inferring Phylogenetic Trees Using Evolutionary Algorithms

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@InProceedings{cotta:ppsn2002:pp720,

• author = "Carlos Cotta and Pablo Moscato",
• title = "Inferring Phylogenetic Trees Using Evolutionary Algorithms",
• booktitle = "Parallel Problem Solving from Nature - PPSN VII",
• address = "Granada, Spain",
• month = "7-11 " # sep,
• pages = "720--729",
• year = "2002",
• editor = "Juan J. Merelo-Guervos and Panagiotis Adamidis and Hans-Georg Beyer and Jose-Luis Fernandez-Villacanas and Hans-Paul Schwefel",
• number = "2439",
• series = "Lecture Notes in Computer Science, LNCS",
• publisher = "Springer-Verlag",
• keywords = "genetic algorithms, genetic programming, Biology and chemistry, Comparisons of representations",
• ISBN = "3-540-44139-5",
• ISBN = "3-540-44139-5",
• DOI = "doi:10.1007/3-540-45712-7_69",
• abstract = "We consider the problem of estimating the evolutionary history of a collection of organisms in terms of a phylogenetic tree. This is a hard combinatorial optimization problem for which different EA approaches are proposed and evaluated. Using two problem instances of different sizes, it is shown that an EA that directly encodes trees and uses ad-hoc operators performs better than several decoder-based EAs, but does not scale well with the problem size. A greedy-decoder EA provides the overall best results, achieving near 100percent success at a lower computational cost than the remaining approaches.",

}

Genetic Programming entries for Carlos Cotta Pablo Moscato

Citations